Monday, November 24, 2008

Optimizing SfN Poster Design Using Eye Tracking Software

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This week I attended my second SfN meeting in Washington D.C. In my spare time between poster sessions, I walked the entire vendor exhibition section browsing for companies that I know of. One vendor that caught my eye (pun to be appreciated shortly) was SensoMotoric Instruments, a developer of eye-tracking software.

A very helpful company representative took time to discuss the details of how the software works despite no obvious benefit of implementing their software in my research.

Then it hit me. If this eye tracking software can be used by web-designers to optimize the layout of their web pages, surely it can be used by researchers to optimize the layout of their conference posters.

The following day I returned to their exhibition booth with a PDF of my poster loaded on a USB drive. The gentlemen helped me load my poster into their eye tracking software called BeGaze and a new "experiment was launched". I was the subject and I was seated in front of a 17 in monitor that had an infrared eye camera that could automatically detect eye gaze direction and head position.

The video below shows the path my eyes took when scanning my poster:



The larger the circle diameter, the longer time was spent focusing on that point.

Once this data was collected, various options exist to describe the way I viewed my own poster. One of which is the colorful Attention Map. The idea here is that the areas of my poster that had a longer gaze time have "warmer" colors:

Attention Map.jpg


Another view is the Focus Map, which shows all areas that I looked at ignoring the time spent. This way I can see what areas I didn't even pay attention to:

Focus Map.jpg


To go to another level of analysis, you can assign regions of interest (e.g., title, intro, results, discussion, etc.):

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Then you can compare values of dwell time for a group of subjects and perform statistical analysis. I have made a graph here:

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The data above are from one person, myself, but with more people viewing you may be able to get a real feel for what areas of your poster people focus on. You can also assess the path people take as they move through your poster and compare that to what you envisioned when you were putting it together in the lab.

I'm afraid I don't have the time to look into the application of this software to really fine-tuning your posters for next neuroscience. However, the representative at the booth was very excited at the prospect of setting up a kiosk at the SfN conference, having people load their poster file onto a computer, and then have the next 20 people that come scan their poster and collect data.

So if you see this next year at neuroscience you now know it came to be.

Thursday, November 13, 2008

History of Anatomy "Made Hot"

Not too long ago I posted a rave review of the online document sharing service Scribd.com.

Although I have posted many docs to my account, I just recently had the experience of having one of my docs make the hot list. This denotes that many people are currently viewing one of my docs in a short time span.

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Here is the document for your viewing pleasure:

A Brief History of Anatomy

Brief History of Anatomy IPHY 3415 TA: Mike Pascoe The Egyptians 1600 B.C. Back in the day 0 AD Egypt Present day • World’s earliest known medical document, The Edwin Smith papyrus, describes early anatomical observations. • Cranial sutures, meninges, external surface of the brain, cerebrospinal fluid, and intracranial pulsations. • Could be based on 3000 B.C. ! IPHY 3415 Human Anatomy Lab Page 2 of 30 The Greeks 500 B.C. Back in the day 0 AD Greece Present day • Found medical schools in Crotona, Italy and Cyrene, Africa. • Studied anatomy of animals. • Influence on anatomical terminology, i.e. Achilles. IPHY 3415 Human Anatomy Lab Page 2 of 30 Herophilos & Erasistratos 400 B.C. Greece & Egypt Back in the day 0 AD Present day • Philosophers declared that body and soul were different. • Allowed for first dissections of human bodies. • Performed in Alexandria, Egypt. IPHY 3415 Human Anatomy Lab Page 2 of 30 Aristotle 384 - 327 B.C. Greece Back in the day 0 AD Present day • First known anatomist. • Drew a distinction between nerves and tendons. • Described how major arteries branched out into smaller blood vessels. IPHY 3415 Human Anatomy Lab Page 2 of 30 King Ptolemy 320 B.C. Back in the day 0 AD Egypt Present day • Established the medical school at Alexandria, Egypt. • Dissections were performed on bodies of executed prisoners - probably in public. IPHY 3415 Human Anatomy Lab Page 2 of 30 The Romans 30 B.C. Back in the day 0 AD Italy & Egypt Present day • The Roman empire conquers Egypt. • Medical school at Alexandria declines in importance. • Latin becomes the international language of anatomy to this day. • Example: Biceps Brachii IPHY 3415 Human Anatomy Lab Two Head Arm Page 2 of 30 Galen 131-200 A.D. Egypt & Italy Back in the day 0 AD Present day • Conclusions were based on study of animals. • Studied in Alexandria then settled in Rome. • Produced some 150-200 medicals writings. • Very influential, professors would read his books while his assistants dissected a cadaver. Page 2 of 30 IPHY 3415 Human Anatomy Lab Pope Boniface VIII 1300 A.D. Back in the day 0 AD Vatican Present day • Papal Bull: De sepulturis • Put a ban on the practice of dismembering war casualties. • Was a drain on soldiers energy. • Overzealous clergy took this as a ban on any kind of human dissection. IPHY 3415 Human Anatomy Lab Page 2 of 30 Pope Alexander V 1410 A.D. Back in the day 0 AD Vatican Present day • His body was allowed to be dissected. • Example of how well-disposed the Church was towards anatomy. • Or… is considered an anti-pope by the Vatican, chop him up who cares !?! IPHY 3415 Human Anatomy Lab Page 2 of 30 Da Vinci 1452-1519 A.D. Italy Back in the day 0 AD Present day • Very influential artist of the Renaissance. • Artists wanted to better understand the underlying structures of the body to enhance their artwork. • Da Vinci performed many dissections. • Sketches provided correct proportions. IPHY 3415 Human Anatomy Lab Page 2 of 30 Henry VIII Back in the day 1491-1547 A.D. Englan d 0 AD Present day • King of England, would hand over corpses of hanged criminals to local anatomists. • Public dissections in theater settings became very popular. IPHY 3415 Human Anatomy Lab Page 2 of 30 Vesalius 1543 A.D. Back in the day 0 AD Italy Present day • Known as the founder of modern anatomy. • Described in writing his observations from public dissections. • His illustrator Kalkar made the most detailed sketches up to their time. • Drawings were “photographically” detailed! IPHY 3415 Human Anatomy Lab Page 2 of 30 Vesalius 1543 A.D. Back in the day 0 AD Italy Present day • Would stack bones of cadavers for permanent display. • Named these displayed after the Greek terms ho skeletos (dried up): • SKELETON! • Institute of Anatomy University of Basel, Switzerland IPHY 3415 Human Anatomy Lab Page 2 of 30 Harvey Back in the day 1616-1628 A.D. Englan d 0 AD Present day • Medical Doctor who was first to describe in exact detail the circulatory system, IPHY 3415 Human Anatomy Lab Page 2 of 30 Albinus 1697-1747 A.D. German y Back in the day 0 AD Present day • Along with his illustrator Wandelaer, compiled variations in anatomy into a standard from (a.k.a. statistically average anatomy). • Began to draw organs along with other related structures (systems). • Conveys that they had an understanding of Page 2 of 30 function (physiology). IPHY 3415 Human Anatomy Lab Pirogov 1810-1881 A.D. Russia Back in the day 0 AD Present day • Father of cross-sectional anatomy. • In his Anaomia topographica, sectionibus per corpus humanum, he published 213 cross-sectional illustrations, including one of a pregnant woman. • Cadavers were frozen in cold winters in St. Petersburg, Russia. IPHY 3415 Human Anatomy Lab Page 2 of 30 Gray 1858 A.D. Back in the day 0 AD England Present day • Famous for his anatomy medical textbook for students Gray’s Anatomy. • Still revised and published to this day. IPHY 3415 Human Anatomy Lab Page 2 of 30 Visible Human Project 1985 - Present day Washington D.C. Back in the day 0 AD Present day • In August of 1991 the National Library of Medicine (NLM) awarded a contract to the University of Colorado Health Sciences Center to create digital cross sections of a 39 year old man who had donated his body to science after being convicted of murder and sentenced to death. • He was executed by lethal injection in Texas in 1993. The Visible Man data was made Page 2 of 30 available in 1994. IPHY 3415 Human Anatomy Lab Von Hagens 1993 - Present day Germany Back in the day 0 AD Present day • Founder of BodyWorlds exhibit and patent holder for body preservation technique known as “plastination” . • In London, on November 20, 2002 he performed the first public autopsy since 1830. • Sparked many debates in both London and Germany. IPHY 3415 Human Anatomy Lab Page 2 of 18 Valverde 1560 von Hagens 2003